3QV8: Crystal Structure Of Leishmania Mexicana Pyruvate Kinase(Lmpyk)in Complex With Benzothiazole-2,5-Disulfonic Acid

Citation:
Abstract
Ehrlich's pioneering chemotherapeutic experiments published in 1904 (Ehrlich, P., and Shiga, K. (1904) Berlin Klin. Wochenschrift 20, 329-362) described the efficacy of a series of dye molecules including trypan blue and trypan red to eliminate trypanosome infections in mice. The molecular structures of the dyes provided a starting point for the synthesis of suramin, which was developed and used as a trypanocidal drug in 1916 and is still in clinical use. Despite the biological importance of these dye-like molecules, the mode of action on trypanosomes has remained elusive. Here we present crystal structures of suramin and three related dyes in complex with pyruvate kinases from Leishmania mexicana or from Trypanosoma cruzi. The phenyl sulfonate groups of all four molecules (suramin, Ponceau S, acid blue 80, and benzothiazole-2,5-disulfonic acid) bind in the position of ADP/ATP at the active sites of the pyruvate kinases (PYKs). The binding positions in the two different trypanosomatid PYKs are nearly identical. We show that suramin competitively inhibits PYKs from humans (muscle, tumor, and liver isoenzymes, K(i) = 1.1-17 mum), T. cruzi (K(i) = 108 mum), and L. mexicana (K(i) = 116 mum), all of which have similar active sites. Synergistic effects were observed when examining suramin inhibition in the presence of an allosteric effector molecule, whereby IC(50) values decreased up to 2-fold for both trypanosomatid and human PYKs. These kinetic and structural analyses provide insight into the promiscuous inhibition observed for suramin and into the mode of action of the dye-like molecules used in Ehrlich's original experiments.
PDB ID: 3QV8Download
MMDB ID: 91910
PDB Deposition Date: 2011/2/25
Updated in MMDB: 2011/09
Experimental Method:
x-ray diffraction
Resolution: 2.45  Å
Source Organism:
Similar Structures:
Biological Unit for 3QV8: tetrameric; determined by author and by software (PISA)
Molecular Components in 3QV8
Label Count Molecule
Proteins (4 molecules)
4
Pyruvate Kinase
Molecule annotation
Chemicals (12 molecules)
1
4
2
8
* Click molecule labels to explore molecular sequence information.

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