3PO5: Structure of a mutant of the large fragment of DNA polymerase I from Thermus Auqaticus in complex with an abasic site and ddATP

PDB ID: 3PO5Download
MMDB ID: 91617
PDB Deposition Date: 2010/11/22
Updated in MMDB: 2017/11
Experimental Method:
x-ray diffraction
Resolution: 2.39  Å
Source Organism:
synthetic construct▼
Similar Structures:
Biological Unit for 3PO5: trimeric; determined by author and by software (PISA)
Molecular Components in 3PO5
Label Count Molecule
Protein (1 molecule)
1
DNA Polymerase I
Molecule annotation
Nucleotides(2 molecules)
1
DNA (5'-d(*gp*ap*cp*cp*ap*cp*gp*gp*cp*gp*cp*(2da))-3')
Molecule annotation
1
DNA (5'-d(p*(3dr)p*tp*gp*cp*gp*cp*cp*gp*tp*gp*gp*tp*c)-3')
Molecule annotation
Chemicals and Non-standard biopolymers (5 molecules)
1
1
MAGNESIUM IONMAGNESIUM ION
2
2
TRIETHYLENE GLYCOLTRIETHYLENE GLYCOL
3
1
2',3'-dideoxyadenosine triphosphate2',3'-dideoxyadenosine triphosphate
4
1
GLYCEROLGLYCEROL
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303