3O1R: Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair Dioxygenase

PDB ID: 3O1RDownload
MMDB ID: 86272
PDB Deposition Date: 2010/7/21
Updated in MMDB: 2010/11
Experimental Method:
x-ray diffraction
Resolution: 1.77  Å
Source Organism:
Escherichia coli K-12▼
Similar Structures:
Biological Unit for 3O1R: trimeric; determined by author and by software (PISA)
Molecular Components in 3O1R
Label Count Molecule
Protein (1 molecule)
1
Alpha-ketoglutarate-dependent Dioxygenase Alkb
Molecule annotation
Nucleotides(2 molecules)
1
DNA (5'-d(*ap*gp*gp*tp*ap*ap*(mdk)p*ap*cp*cp*gp*t)-3')
Molecule annotation
1
DNA (5'-d(*ap*ap*cp*gp*gp*tp*ap*tp*tp*ap*cp*cp*t)-3')
Molecule annotation
Chemicals and Non-standard biopolymers (4 molecules)
1
1
MANGANESE (II) IONMANGANESE (II) ION
2
1
2-OXOGLUTARIC ACID2-OXOGLUTARIC ACID
3
1
GLYCEROLGLYCEROL
4
1
Molecule information is not available.
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303