3NDK: RB69 DNA Polymerase (Y567A) Ternary Complex with dCTP Opposite dG

PDB ID: 3NDKDownload
MMDB ID: 88227
PDB Deposition Date: 2010/6/7
Updated in MMDB: 2023/09
Experimental Method:
x-ray diffraction
Resolution: 2  Å
Source Organism:
synthetic construct▼
Similar Structures:
Biological Unit for 3NDK: trimeric; determined by author and by software (PISA)
Molecular Components in 3NDK
Label Count Molecule
Protein (1 molecule)
1
DNA Polymerase
Molecule annotation
Nucleotides(2 molecules)
1
DNA (5'-d(*tp*cp*ap*gp*gp*tp*ap*ap*gp*cp*ap*gp*tp*cp*cp*gp*cp*g)-3')
Molecule annotation
1
DNA (5'-d(*gp*cp*gp*gp*ap*cp*tp*gp*cp*tp*tp*ap*(doc))-3')
Molecule annotation
Chemicals and Non-standard biopolymers (8 molecules)
1
1
2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE
2
7
CALCIUM IONCALCIUM ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303