3MYR: Crystal structure of [NiFe] hydrogenase from Allochromatium vinosum in its Ni-A state

PDB ID: 3MYRDownload
MMDB ID: 83844
PDB Deposition Date: 2010/5/11
Updated in MMDB: 2010/10
Experimental Method:
x-ray diffraction
Resolution: 2.1  Å
Source Organism:
Similar Structures:
Biological Unit for 3MYR: dimeric; determined by author and by software (PISA)
Molecular Components in 3MYR
Label Count Molecule
Proteins (2 molecules)
1
Hydrogenase (Nife) Small Subunit Hyda
Molecule annotation
1
Nickel-dependent Hydrogenase Large Subunit
Molecule annotation
Chemicals and Non-standard biopolymers (8 molecules)
1
2
IRON/SULFUR CLUSTERIRON/SULFUR CLUSTER
2
1
FE3-S4 CLUSTERFE3-S4 CLUSTER
3
2
IMIDAZOLEIMIDAZOLE
4
1
CHLORIDE IONCHLORIDE ION
5
1
NI-FE OXIDIZED ACTIVE CENTERNI-FE OXIDIZED ACTIVE CENTER
6
1
MAGNESIUM IONMAGNESIUM ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303