3MK3: Crystal Structure Of Lumazine Synthase From Salmonella Typhimurium Lt2

Riboflavin biosynthesis is an essential pathway in bacteria, in contrast to animals, which obtain riboflavin from their diet. Therefore, the enzymes involved in the riboflavin-biosynthesis pathway are potential targets for the development of antibacterial drugs. Lumazine synthase, an enzyme that is involved in the penultimate step of riboflavin biosynthesis, catalyzes the formation of 6,7-dimethyl-8-ribityllumazine from 3,4-dihydroxy-2-butanone 4-phosphate and 5-amino-6-ribitylamino-2,4-(1H,3H)-pyrimidinedione. Lumazine synthase from Salmonella typhimurium (sLS) has been cloned, overexpressed, purified and was crystallized in three forms, each with different crystal packing. The crystal structure of sLS in the monoclinic space group P2(1) has been determined with 60 subunits per asymmetric unit, packed as an icosahedron, at 3.57 A resolution. Interestingly, sLS contains an N-terminal proline residue (Pro11) which had previously been suggested to disrupt the formation of the icosohedral assembly. In addition, comparison of the structure of sLS with known orthologous lumazine synthase structures allowed identification of the amino-acid residues involved in substrate binding and catalysis. The sLS structure reported here could serve as a starting point for the development of species-specific antibacterial drugs.
PDB ID: 3MK3Download
MMDB ID: 88345
PDB Deposition Date: 2010/4/14
Updated in MMDB: 2011/05
Experimental Method:
x-ray diffraction
Resolution: 3.57  Å
Source Organism:
Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Similar Structures:
Biological Unit for 3MK3: 60-meric; determined by author and by software (PISA)
Molecular Components in 3MK3
Label Count Molecule
Proteins (60 molecules)
6,7-dimethyl-8-ribityllumazine Synthase(Gene symbol: ribH)
Molecule annotation
Chemicals (79 molecules)
* Click molecule labels to explore molecular sequence information.

Citing MMDB