3KHG: Dpo4 extension ternary complex with misinserted A opposite the 2-aminofluorene-guanine [AF]G lesion

PDB ID: 3KHGDownload
MMDB ID: 80135
PDB Deposition Date: 2009/10/30
Updated in MMDB: 2012/11
Experimental Method:
x-ray diffraction
Resolution: 2.96  Å
Source Organism:
Saccharolobus solfataricus P2▼
Similar Structures:
Biological Unit for 3KHG: trimeric; determined by author and by software (PISA)
Molecular Components in 3KHG
Label Count Molecule
Protein (1 molecule)
1
DNA Polymerase IV
Molecule annotation
Nucleotides(2 molecules)
1
5'-d(*gp*tp*tp*gp*gp*ap*tp*gp*gp*tp*ap*gp*(2da))-3'
Molecule annotation
1
5'-d(*c*cp*tp*ap*ap*cp*gp*cp*tp*ap*cp*cp*ap*tp*cp*cp*ap*ap*cp*c)-3'
Molecule annotation
Chemicals and Non-standard biopolymers (6 molecules)
1
1
2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE
2
3
CALCIUM IONCALCIUM ION
3
1
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
4
1
2-AMINOFLUORENE2-AMINOFLUORENE
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303