3K5M: Crystal structure of E.coli Pol II-abasic DNA-ddGTP Lt(-2, 2) ternary complex

PDB ID: 3K5MDownload
MMDB ID: 79782
PDB Deposition Date: 2009/10/7
Updated in MMDB: 2018/11
Experimental Method:
x-ray diffraction
Resolution: 2.04  Å
Source Organism:
synthetic construct▼
Similar Structures:
Biological Unit for 3K5M: trimeric; determined by author and by software (PISA)
Molecular Components in 3K5M
Label Count Molecule
Protein (1 molecule)
1
DNA Polymerase II
Molecule annotation
Nucleotides(2 molecules)
1
DNA (5'-d(*ap*gp*tp*cp*cp*tp*gp*(3dr)p*ap*cp*gp*cp*tp*ap*gp*gp*cp*ap*cp*a)-3')
Molecule annotation
1
DNA (5'-d(*gp*tp*gp*cp*cp*tp*ap*gp*cp*gp*tp*ap*g)-3')
Molecule annotation
Chemicals and Non-standard biopolymers (3 molecules)
1
1
2'-3'-DIDEOXYGUANOSINE-5'-TRIPHOSPHATE2'-3'-DIDEOXYGUANOSINE-5'-TRIPHOSPHATE
2
2
CALCIUM IONCALCIUM ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303