3JPQ: Ternary complex of DNA polymerase beta with a dideoxy terminated primer and 2'-deoxyguanosine 5'-beta, gamma-monoBromo methylene triphosphate

PDB ID: 3JPQDownload
MMDB ID: 82460
PDB Deposition Date: 2009/9/4
Updated in MMDB: 2023/09
Experimental Method:
x-ray diffraction
Resolution: 1.9  Å
Source Organism:
synthetic construct▼
Similar Structures:
Biological Unit for 3JPQ: tetrameric; determined by author and by software (PISA)
Molecular Components in 3JPQ
Label Count Molecule
Protein (1 molecule)
1
DNA Polymerase Beta
Molecule annotation
Nucleotides(3 molecules)
1
5'-d(p*gp*tp*cp*gp*g)-3'
Molecule annotation
1
5'-d(*gp*cp*tp*gp*ap*tp*gp*cp*gp*(doc))-3'
Molecule annotation
1
5'-d(*cp*cp*gp*ap*cp*cp*gp*cp*gp*cp*ap*tp*cp*ap*gp*c)-3'
Molecule annotation
Chemicals and Non-standard biopolymers (8 molecules)
1
1
5'-O-[(R)-{[(S)-[(R)-bromo(phosphono)methyl](hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]-2'-deoxyguanosine5'-O-[(R)-{[(S)-[(R)-bromo(phosphono)methyl](hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]-2'-deoxyguanosine
2
1
MAGNESIUM IONMAGNESIUM ION
3
3
SODIUM IONSODIUM ION
4
3
CHLORIDE IONCHLORIDE ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303