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3ISD:
Ternary complex of human DNA polymerase beta with an abasic site (THF): DAPCPP mismatch
PDB ID:
3ISD
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MMDB ID:
76762
PDB Deposition Date:
2009/8/25
Updated in MMDB:
2009/11
Experimental Method:
x-ray diffraction
Resolution:
2.6 Å
Source Organism:
synthetic construct
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Taxonomy
Molecule
synthetic construct
D, P, T
Homo sapiens
A
Similar Structures:
VAST+
Download sequence data
Biological Unit for 3ISD: tetrameric; determined by author and by software (PISA)
Molecular Components in 3ISD
Label
Count
Molecule
Protein (1 molecule)
A
1
DNA Polymerase Beta
Nucleotides(3 molecules)
D
1
5'-d(p*gp*tp*cp*gp*g)-3'
P
1
5'-d(*gp*cp*tp*gp*ap*tp*gp*cp*gp*c)-3'
T
1
5'-d(*cp*cp*gp*ap*cp*(3dr)p*gp*cp*gp*cp*ap*tp*cp*ap*gp*c)-3'
Chemicals and Non-standard biopolymers (13 molecules)
1
3
SODIUM ION
2
8
MANGANESE (II) ION
3
1
2'-deoxy-5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}phosphoryl]adenosine
4
1
1,2-ETHANEDIOL
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH.
"
MMDB and VAST+: tracking structural similarities between macromolecular complexes.
Nucleic Acids Res. 2014 Jan; 42(Database issue)
:D297-303