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3I4M:
8-oxoguanine containing RNA polymerase II elongation complex D
PDB ID:
3I4M
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MMDB ID:
76597
PDB Deposition Date:
2009/7/2
Updated in MMDB:
2024/11
Experimental Method:
x-ray diffraction
Resolution:
3.7 Å
Source Organism:
synthetic construct
▼
Taxonomy
Molecule
synthetic construct
T, N, P
Saccharomyces cerevisiae
A, B, C, D, E, F, G, H, I, J, K, L
Similar Structures:
VAST+
Download sequence data
Biological Unit for 3I4M: 15-meric; determined by author
Molecular Components in 3I4M
Label
Count
Molecule
Proteins (12 molecules)
A
1
DNA-directed RNA Polymerase II Subunit Rpb1
B
1
DNA-directed RNA Polymerase II Subunit Rpb2
C
1
DNA-directed RNA Polymerase II Subunit Rpb3
D
1
DNA-directed RNA Polymerase II Subunit Rpb4
E
1
DNA-directed RNA Polymerases I, II, and III Subunit Rpabc1
F
1
DNA-directed RNA Polymerases I, II, and III Subunit Rpabc2
G
1
DNA-directed RNA Polymerase II Subunit Rpb7
H
1
DNA-directed RNA Polymerases I, II, and III Subunit Rpabc3
I
1
DNA-directed RNA Polymerase II Subunit Rpb9
J
1
DNA-directed RNA Polymerases I, II, and III Subunit Rpabc5
K
1
DNA-directed RNA Polymerase II Subunit Rpb11
L
1
DNA-directed RNA Polymerases I, II, and III Subunit Rpabc4
Nucleotides(3 molecules)
T
1
DNA (5'-d(*ap*g*cp*tp*cp*ap*ap*gp*tp*ap*cp*tp*tp*ap*(8og)p*gp*cp*cp*(bru)p*gp*gp*tp*cp*ap*tp*t)-3')
N
1
DNA (5'-d(*ap*gp*tp*ap*cp*tp*tp*gp*ap*gp*cp*t)-3')
P
1
RNA (5'-r(*up*gp*cp*ap*up*c*up*up*cp*cp*ap*gp*gp*cp*cp*u)-3')
Chemicals and Non-standard biopolymers (9 molecules)
1
1
MAGNESIUM ION
2
8
ZINC ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH.
"
MMDB and VAST+: tracking structural similarities between macromolecular complexes.
Nucleic Acids Res. 2014 Jan; 42(Database issue)
:D297-303