3HWW: Crystal structure of menaquinone synthesis protein MenD from E. coli in complex with oxoglutarate

PDB ID: 3HWWDownload
MMDB ID: 77833
PDB Deposition Date: 2009/6/19
Updated in MMDB: 2023/11
Experimental Method:
x-ray diffraction
Resolution: 1.95  Å
Source Organism:
Similar Structures:
Biological Unit for 3HWW: dimeric; determined by author and by software (PISA)
Molecular Components in 3HWW
Label Count Molecule
Proteins (2 molecules)
2
2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate Synthase
(Gene symbol: menD)
Molecule annotation
Chemicals and Non-standard biopolymers (49 molecules)
1
2
2-OXOGLUTARIC ACID2-OXOGLUTARIC ACID
2
2
MAGNESIUM IONMAGNESIUM ION
3
37
SODIUM IONSODIUM ION
4
2
CHLORIDE IONCHLORIDE ION
5
6
GLYCEROLGLYCEROL
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303