3HUJ: Crystal structure of human CD1d-alpha-Galactosylceramide in complex with semi-invariant NKT cell receptor

PDB ID: 3HUJDownload
MMDB ID: 75681
PDB Deposition Date: 2009/6/14
Updated in MMDB: 2023/11
Experimental Method:
x-ray diffraction
Resolution: 2.5  Å
Source Organism:
Similar Structures:
Biological Unit for 3HUJ: tetrameric; determined by author
Molecular Components in 3HUJ
Label Count Molecule
Proteins (4 molecules)
1
T-cell Surface Glycoprotein Cd1d
(Gene symbol: CD1D)
Molecule annotation
1
Beta-2-microglobulin
(Gene symbol: B2M)
Molecule annotation
1
Nkt15 T Cell Receptor Alpha-chain
Molecule annotation
1
Nkt15 T Cell Receptor Beta-chain
Molecule annotation
Chemicals and Non-standard biopolymers (6 molecules)
1
3
2-acetamido-2-deoxy-beta-D-glucopyranose2-acetamido-2-deoxy-beta-D-glucopyranose
2
1
2-acetamido-2-deoxy-alpha-D-glucopyranose2-acetamido-2-deoxy-alpha-D-glucopyranose
3
1
N-{(1S,2R,3S)-1-[(ALPHA-D-GALACTOPYRANOSYLOXY)METHYL]-2,3-DIHYDROXYHEPTADECYL}HEXACOSANAMIDEN-{(1S,2R,3S)-1-[(ALPHA-D-GALACTOPYRANOSYLOXY)METHYL]-2,3-DIHYDROXYHEPTADECYL}HEXACOSANAMIDE
4
1
MAGNESIUM IONMAGNESIUM ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303