3HE6: Crystal structure of mouse CD1d-alpha-galactosylceramide with mouse Valpha14-Vbeta8.2 NKT TCR

PDB ID: 3HE6Download
MMDB ID: 75660
PDB Deposition Date: 2009/5/7
Updated in MMDB: 2009/12
Experimental Method:
x-ray diffraction
Resolution: 2.9  Å
Source Organism:
Similar Structures:
Biological Unit for 3HE6: tetrameric; determined by author and by software (PISA)
Molecular Components in 3HE6
Label Count Molecule
Proteins (4 molecules)
1
Antigen-presenting Glycoprotein Cd1d1
(Gene symbol: Cd1d1)
Molecule annotation
1
Beta-2-microglobulin
(Gene symbol: B2m)
Molecule annotation
1
Valpha14(mouse Variable Domain, Human Constant Domain)
Molecule annotation
1
Vbeta8.2(mouse Variable Domain, Human Constant Domain)
Molecule annotation
Chemicals and Non-standard biopolymers (5 molecules)
1
4
N-ACETYL-D-GLUCOSAMINEN-ACETYL-D-GLUCOSAMINE
2
1
N-{(1S,2R,3S)-1-[(ALPHA-D-GALACTOPYRANOSYLOXY)METHYL]-2,3-DIHYDROXYHEPTADECYL}HEXACOSANAMIDEN-{(1S,2R,3S)-1-[(ALPHA-D-GALACTOPYRANOSYLOXY)METHYL]-2,3-DIHYDROXYHEPTADECYL}HEXACOSANAMIDE
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303