3GS8: An all-RNA hairpin ribozyme A38N1dA38 variant with a transition-state mimic substrate strand

PDB ID: 3GS8Download
MMDB ID: 71026
PDB Deposition Date: 2009/3/26
Updated in MMDB: 2011/05
Experimental Method:
x-ray diffraction
Resolution: 2.85  Å
Source Organism:
Biological Unit for 3GS8: tetrameric; determined by author
Molecular Components in 3GS8
Label Count Molecule
Nucleotides(4 molecules)
1
RNA (5'-r(*up*cp*cp*cp*ap*gp*up*cp*cp*ap*cp*cp*gp*u)-3')
Molecule annotation
1
RNA (5'-r(*cp*gp*gp*up*gp*ap*gp*ap*ap*gp*gp*g)-3')
Molecule annotation
1
RNA (5'-r(p*gp*gp*cp*ap*gp*ap*gp*ap*ap*ap*cp*ap*cp*ap*cp*gp*a)-3')
Molecule annotation
1
RNA (5'-r(*up*cp*gp*up*gp*gp*up*ap*cp*ap*up*up*ap*cp*cp*up*gp*cp*c)-3')
Molecule annotation
Chemicals and Non-standard biopolymers (4 molecules)
1
1
SULFATE IONSULFATE ION
2
1
2-[2-(2-HYDROXYETHOXY)ETHOXY]ETHYL DIHYDROGEN PHOSPHATE2-[2-(2-HYDROXYETHOXY)ETHOXY]ETHYL DIHYDROGEN PHOSPHATE
3
2
COBALT HEXAMMINE(III)COBALT HEXAMMINE(III)
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303