3GMP: Structure of mouse CD1d in complex with PBS-25

PDB ID: 3GMPDownload
MMDB ID: 77983
PDB Deposition Date: 2009/3/14
Updated in MMDB: 2017/11
Experimental Method:
x-ray diffraction
Resolution: 1.7  Å
Source Organism:
Similar Structures:
Biological Unit for 3GMP: dimeric; determined by author and by software (PISA)
Molecular Components in 3GMP
Label Count Molecule
Proteins (2 molecules)
1
T-cell Surface Glycoprotein Cd1d1
(Gene symbol: Cd1d1)
Molecule annotation
1
Beta-2 Microglobulin
(Gene symbol: B2m)
Molecule annotation
Chemicals and Non-standard biopolymers (18 molecules)
1
5
2-acetamido-2-deoxy-beta-D-glucopyranose2-acetamido-2-deoxy-beta-D-glucopyranose
2
2
beta-D-mannopyranosebeta-D-mannopyranose
3
4
alpha-D-mannopyranosealpha-D-mannopyranose
4
1
alpha-L-fucopyranosealpha-L-fucopyranose
5
1
(2S,3S,4R)-N-OCTANOYL-1-[(ALPHA-D-GALACTOPYRANOSYL)OXY]-2-AMINO-OCTADECANE-3,4-DIOL(2S,3S,4R)-N-OCTANOYL-1-[(ALPHA-D-GALACTOPYRANOSYL)OXY]-2-AMINO-OCTADECANE-3,4-DIOL
6
1
PALMITIC ACIDPALMITIC ACID
7
4
1,2-ETHANEDIOL1,2-ETHANEDIOL
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303