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3GII:
Dpo4 extension ternary complex with disordered A opposite an oxoG in anti conformation
PDB ID:
3GII
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MMDB ID:
72792
PDB Deposition Date:
2009/3/5
Updated in MMDB:
2011/12
Experimental Method:
x-ray diffraction
Resolution:
2.6 Å
Source Organism:
Saccharolobus solfataricus P2
▼
Taxonomy
Molecule
Saccharolobus solfataricus P2
A
synthetic construct
D, E
Similar Structures:
VAST+
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Biological Unit for 3GII: trimeric; determined by author and by software (PISA)
Molecular Components in 3GII
Label
Count
Molecule
Protein (1 molecule)
A
1
DNA Polymerase IV
Nucleotides(2 molecules)
D
1
5'-d(*gp*tp*tp*gp*gp*ap*tp*gp*gp*tp*ap*gp*(2da))-3'
E
1
5'-d(*cp*tp*ap*ap*cp*(8og)p*cp*tp*ap*cp*cp*ap*tp*cp*cp*ap*ap*cp*c)-3'
Chemicals and Non-standard biopolymers (5 molecules)
1
1
2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE
2
3
CALCIUM ION
3
1
SODIUM ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH.
"
MMDB and VAST+: tracking structural similarities between macromolecular complexes.
Nucleic Acids Res. 2014 Jan; 42(Database issue)
:D297-303