3GDN: Almond hydroxynitrile lyase in complex with benzaldehyde

PDB ID: 3GDNDownload
MMDB ID: 70442
PDB Deposition Date: 2009/2/24
Updated in MMDB: 2023/09
Experimental Method:
x-ray diffraction
Resolution: 1.67  Å
Source Organism:
Similar Structures:
Biological Unit for 3GDN: monomeric; determined by author and by software (PISA)
Molecular Components in 3GDN
Label Count Molecule
Protein (1 molecule)
1
R-oxynitrile Lyase Isoenzyme 1
Molecule annotation
Chemicals and Non-standard biopolymers (13 molecules)
1
5
2-acetamido-2-deoxy-beta-D-glucopyranose2-acetamido-2-deoxy-beta-D-glucopyranose
2
2
alpha-D-mannopyranosealpha-D-mannopyranose
3
1
beta-D-mannopyranosebeta-D-mannopyranose
4
1
alpha-L-fucopyranosealpha-L-fucopyranose
5
1
FLAVIN-ADENINE DINUCLEOTIDEFLAVIN-ADENINE DINUCLEOTIDE
6
1
benzaldehydebenzaldehyde
7
2
(2R)-hydroxy(phenyl)ethanenitrile(2R)-hydroxy(phenyl)ethanenitrile
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303