3G08: Crystal structure of the alpha-galactosylceramide analog OCH in complex with mouse CD1d

PDB ID: 3G08Download
MMDB ID: 78546
PDB Deposition Date: 2009/1/27
Updated in MMDB: 2009/12
Experimental Method:
x-ray diffraction
Resolution: 1.6  Å
Source Organism:
Similar Structures:
Biological Unit for 3G08: dimeric; determined by author and by software (PISA)
Molecular Components in 3G08
Label Count Molecule
Proteins (2 molecules)
1
T-cell Surface Glycoprotein Cd1d1
(Gene symbol: Cd1d1)
Molecule annotation
1
Beta-2 Microglobulin
(Gene symbol: B2m)
Molecule annotation
Chemicals and Non-standard biopolymers (6 molecules)
1
4
2-acetamido-2-deoxy-beta-D-glucopyranose2-acetamido-2-deoxy-beta-D-glucopyranose
2
1
N-{(1S,2S,3R)-1-[(alpha-D-galactopyranosyloxy)methyl]-2,3-dihydroxyoctyl}tetracosanamideN-{(1S,2S,3R)-1-[(alpha-D-galactopyranosyloxy)methyl]-2,3-dihydroxyoctyl}tetracosanamide
3
1
PALMITIC ACIDPALMITIC ACID
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303