3FKB: Structure of NDPK H122G and tenofovir-diphosphate

PDB ID: 3FKBDownload
MMDB ID: 77013
PDB Deposition Date: 2008/12/16
Updated in MMDB: 2023/11
Experimental Method:
x-ray diffraction
Resolution: 1.65  Å
Source Organism:
Similar Structures:
Biological Unit for 3FKB: hexameric; determined by author and by software (PISA)
Molecular Components in 3FKB
Label Count Molecule
Proteins (6 molecules)
6
Nucleoside Diphosphate Kinase, Cytosolic
(Gene symbol: ndkC-1)
Molecule annotation
Chemicals and Non-standard biopolymers (19 molecules)
1
5
[(2R)-1-(6-aminopurin-9-yl)propan-2-yl]oxymethyl-phosphonooxy-phosphinic acid[(2R)-1-(6-aminopurin-9-yl)propan-2-yl]oxymethyl-phosphonooxy-phosphinic acid
2
6
MAGNESIUM IONMAGNESIUM ION
3
5
1,2-ETHANEDIOL1,2-ETHANEDIOL
4
2
GLYCEROLGLYCEROL
5
1
[2-(6-AMINO-9H-PURIN-9-YL)-1-METHYLETHOXY]METHYL-TRIPHOSPHATE[2-(6-AMINO-9H-PURIN-9-YL)-1-METHYLETHOXY]METHYL-TRIPHOSPHATE
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303