3DD2: Crystal Structure Of An Rna Aptamer Bound To Human Thrombin

PDB ID: 3DD2Download
MMDB ID: 69611
PDB Deposition Date: 2008/6/4
Updated in MMDB: 2017/11
Experimental Method:
x-ray diffraction
Resolution: 1.9  Å
Source Organism:
Homo sapiens▼
Similar Structures:
Biological Unit for 3DD2: trimeric; determined by author and by software (PISA)
Molecular Components in 3DD2
Label Count Molecule
Proteins (2 molecules)
1
Thrombin Light Chain
Molecule annotation
1
Thrombin Heavy Chain
Molecule annotation
Nucleotide(1 molecule)
1
RNA (26-mer)
Molecule annotation
Chemicals and Non-standard biopolymers (13 molecules)
1
3
Di(Hydroxyethyl)etherDi(Hydroxyethyl)ether
2
1
D-Phenylalanyl-N-[(2s,3s)-6-{[amino(Iminio)methyl]amino}-1-Chloro-2-Hydroxyhexan-3-Yl]-L-ProlinamideD-Phenylalanyl-N-[(2s,3s)-6-{[amino(Iminio)methyl]amino}-1-Chloro-2-Hydroxyhexan-3-Yl]-L-Prolinamide
3
2
Magnesium IonMagnesium Ion
4
1
Hexaethylene GlycolHexaethylene Glycol
5
6
Acetic AcidAcetic Acid
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303