3D6G: Fc fragment of IgG1 (Herceptin) with protein-A mimetic peptide dendrimer ligand

PDB ID: 3D6GDownload
MMDB ID: 73292
PDB Deposition Date: 2008/5/19
Updated in MMDB: 2009/06
Experimental Method:
x-ray diffraction
Resolution: 2.3  Å
Source Organism:
Similar Structures:
Biological Unit for 3D6G: dimeric; determined by author and by software (PISA)
Molecular Components in 3D6G
Label Count Molecule
Proteins (2 molecules)
2
IG Gamma-1 Chain C Region
(Gene symbol: IGHG1)
Molecule annotation
Chemicals and Non-standard biopolymers (17 molecules)
1
8
N-ACETYL-D-GLUCOSAMINEN-ACETYL-D-GLUCOSAMINE
2
2
BETA-D-MANNOSEBETA-D-MANNOSE
3
4
ALPHA-D-MANNOSEALPHA-D-MANNOSE
4
2
ALPHA-L-FUCOSEALPHA-L-FUCOSE
5
1
2-[[(2S)-2,6-bis[[(2S)-2,6-bis[[(2R)-2-[[(2R,3R)-2-[[(2R)-2-amino-5-carbamimidamido-pentanoyl]amino]-3-hydroxy-butanoyl]amino]-3-(4-hydroxyphenyl)propanoyl]amino]hexanoyl]amino]hexanoyl]amino]ethanoic acid2-[[(2S)-2,6-bis[[(2S)-2,6-bis[[(2R)-2-[[(2R,3R)-2-[[(2R)-2-amino-5-carbamimidamido-pentanoyl]amino]-3-hydroxy-butanoyl]amino]-3-(4-hydroxyphenyl)propanoyl]amino]hexanoyl]amino]hexanoyl]amino]ethanoic acid
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303