3D1I: Structure of the Thioalkalivibrio nitratireducens cytochrome c nitrite reductase in a complex with nitrite

PDB ID: 3D1IDownload
MMDB ID: 72580
PDB Deposition Date: 2008/5/6
Updated in MMDB: 2023/11
Experimental Method:
x-ray diffraction
Resolution: 1.8  Å
Source Organism:
Similar Structures:
Biological Unit for 3D1I: hexameric; determined by author and by software (PISA)
Molecular Components in 3D1I
Label Count Molecule
Proteins (6 molecules)
6
Eight-heme Nitrite Reductase
Molecule annotation
Chemicals and Non-standard biopolymers (91 molecules)
1
48
HEME CHEME C
2
12
CALCIUM IONCALCIUM ION
3
6
NITRITE IONNITRITE ION
4
18
TETRAETHYLENE GLYCOLTETRAETHYLENE GLYCOL
5
6
1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE
6
1
SODIUM IONSODIUM ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303