3B9J: Structure of Xanthine Oxidase with 2-hydroxy-6-methylpurine

PDB ID: 3B9JDownload
MMDB ID: 235017
PDB Deposition Date: 2007/11/5
Updated in MMDB: 2023/09
Experimental Method:
x-ray diffraction
Resolution: 2.3  Å
Source Organism:
Similar Structures:
Biological Unit for 3B9J: trimeric; determined by author and by software (PISA)
Molecular Components in 3B9J
Label Count Molecule
Proteins (3 molecules)
1
Xanthine Oxidase
(Gene symbol: XDH)
Molecule annotation
1
Xanthine Oxidase
(Gene symbol: XDH)
Molecule annotation
1
Xanthine Oxidase
(Gene symbol: XDH)
Molecule annotation
Chemicals and Non-standard biopolymers (7 molecules)
1
2
FE2/S2 (INORGANIC) CLUSTERFE2/S2 (INORGANIC) CLUSTER
2
1
FLAVIN-ADENINE DINUCLEOTIDEFLAVIN-ADENINE DINUCLEOTIDE
3
1
CALCIUM IONCALCIUM ION
4
1
PHOSPHONIC ACIDMONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,7,8A,9,10,10A-HEXAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL)ESTERPHOSPHONIC ACIDMONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,7,8A,9,10,10A-HEXAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL)ESTER
5
1
DIOXOTHIOMOLYBDENUM(VI) IONDIOXOTHIOMOLYBDENUM(VI) ION
6
1
6-methyl-3,9-dihydro-2H-purin-2-one6-methyl-3,9-dihydro-2H-purin-2-one
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303