3B6M: Wrba From Escherichia Coli, Second Crystal Form

Citation:
Abstract
The flavoprotein WrbA, originally described as a tryptophan (W) repressor-binding protein in Escherichia coli, has recently been shown to exhibit the enzymatic activity of a NADH:quinone oxidoreductase. This finding points toward a possible role in stress response and in the maintenance of a supply of reduced quinone. We have determined the three-dimensional structure of the WrbA holoprotein from E. coli at high resolution (1.66 A), and we observed a characteristic, tetrameric quaternary structure highly similar to the one found in the WrbA homologs of Deinococcus radiodurans and Pseudomonas aeruginosa. A similar tetramer was originally observed in an iron-sulfur flavoprotein involved in the reduction of reactive oxygen species. Together with other, recently characterized proteins such as YhdA or YLR011wp (Lot6p), these tetrameric flavoproteins may constitute a large family with diverse functions in redox catalysis. WrbA binds substrates at an active site that provides an ideal stacking environment for aromatic moieties, while providing a pocket that is structured to stabilize the ADP part of an NADH molecule in its immediate vicinity. Structures of WrbA in complex with benzoquinone and NADH suggest a sequential binding mechanism for both molecules in the catalytic cycle.
PDB ID: 3B6MDownload
MMDB ID: 61275
PDB Deposition Date: 2007/10/29
Updated in MMDB: 2007/12
Experimental Method:
x-ray diffraction
Resolution: 1.85  Å
Source Organism:
Similar Structures:
Biological Unit for 3B6M: tetrameric; determined by author and by software (PISA)
Molecular Components in 3B6M
Label Count Molecule
Proteins (4 molecules)
4
Flavoprotein Wrba(Gene symbol: wrbA)
Molecule annotation
Chemicals (10 molecules)
1
4
2
4
3
2
* Click molecule labels to explore molecular sequence information.

Citing MMDB
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