3AGV: Crystal structure of a human IgG-aptamer complex

PDB ID: 3AGVDownload
MMDB ID: 86056
PDB Deposition Date: 2010/4/8
Updated in MMDB: 2024/12
Experimental Method:
x-ray diffraction
Resolution: 2.15  Å
Source Organism:
synthetic construct▼
Similar Structures:
Biological Unit for 3AGV: tetrameric; determined by author
Molecular Components in 3AGV
Label Count Molecule
Proteins (2 molecules)
2
IG Gamma-1 Chain C Region
Molecule annotation
Nucleotides(2 molecules)
2
5'-r(*gp*gp*ap*gp*gp*(uft)p*gp*(cfz)p*(uft)p*(cfz)p*(cfz)p*gp*ap*ap*a*gp*gp*ap*ap*(cfz)p*(uft)p*(cfz)p*(cfz)p*a)-3'
Molecule annotation
Chemicals and Non-standard biopolymers (14 molecules)
1
4
alpha-D-mannopyranosealpha-D-mannopyranose
2
2
2-acetamido-2-deoxy-alpha-D-glucopyranose2-acetamido-2-deoxy-alpha-D-glucopyranose
3
1
alpha-D-galactopyranosealpha-D-galactopyranose
4
2
2-acetamido-2-deoxy-beta-D-glucopyranose2-acetamido-2-deoxy-beta-D-glucopyranose
5
1
beta-D-mannopyranosebeta-D-mannopyranose
6
1
beta-D-galactopyranosebeta-D-galactopyranose
7
1
beta-L-fucopyranosebeta-L-fucopyranose
8
2
CALCIUM IONCALCIUM ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303