2Y2B: crystal structure of AmpD in complex with reaction products

PDB ID: 2Y2BDownload
MMDB ID: 92092
PDB Deposition Date: 2010/12/14
Updated in MMDB: 2022/11
Experimental Method:
x-ray diffraction
Resolution: 1.9  Å
Source Organism:
Similar Structures:
Biological Unit for 2Y2B: monomeric; determined by author and by software (PISA)
Molecular Components in 2Y2B
Label Count Molecule
Protein (1 molecule)
1
1,6-anhydro-n-acetylmuramyl-l-alanine Amidase Ampd
Molecule annotation
Chemicals and Non-standard biopolymers (3 molecules)
1
1
2-(2-ACETYLAMINO-4-HYDROXY-6,8-DIOXA-BICYCLO[3.2.1]OCT-3-YLOXY)-PROPIONIC ACID2-(2-ACETYLAMINO-4-HYDROXY-6,8-DIOXA-BICYCLO[3.2.1]OCT-3-YLOXY)-PROPIONIC ACID
2
1
L-ALA-GAMMA-D-GLU-MESO-DIAMINOPIMELIC ACIDL-ALA-GAMMA-D-GLU-MESO-DIAMINOPIMELIC ACID
3
1
ZINC IONZINC ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303