2XY7: Crystal structure of a salicylic aldehyde base in the pre-insertion site of fragment DNA polymerase I from Bacillus stearothermophilus

PDB ID: 2XY7Download
MMDB ID: 93117
PDB Deposition Date: 2010/11/15
Updated in MMDB: 2023/12
Experimental Method:
x-ray diffraction
Resolution: 3.05  Å
Source Organism:
synthetic construct▼
Similar Structures:
Biological Unit for 2XY7: trimeric; determined by author and by software (PISA)
Molecular Components in 2XY7
Label Count Molecule
Protein (1 molecule)
1
DNA Polymerase I
Molecule annotation
Nucleotides(2 molecules)
1
5'-d(*gp*cp*cp*tp*gp*ap*cp*tp*cp*gp)-3'
Molecule annotation
1
5'-d(*sayp*cp*gp*ap*gp*tp*cp*ap*gp*gp*cp)-3'
Molecule annotation
Chemicals and Non-standard biopolymers (4 molecules)
1
1
alpha-D-glucopyranosealpha-D-glucopyranose
2
1
beta-D-fructofuranosebeta-D-fructofuranose
3
2
SULFATE IONSULFATE ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303