2XK1: Crystal structure of a complex between Actinomadura R39 DD-peptidase and a boronate inhibitor

PDB ID: 2XK1Download
MMDB ID: 88172
PDB Deposition Date: 2010/7/7
Updated in MMDB: 2023/12
Experimental Method:
x-ray diffraction
Resolution: 2.8  Å
Source Organism:
Similar Structures:
Biological Unit for 2XK1: monomeric; determined by author and by software (PISA)
Molecular Components in 2XK1
Label Count Molecule
Protein (1 molecule)
1
D-alanyl-d-alanine Carboxypeptidase
Molecule annotation
Chemicals and Non-standard biopolymers (7 molecules)
1
1
[(1S)-1-{[(2-benzylphenyl)carbonyl]amino}ethyl](trihydroxy)borate(1-)[(1S)-1-{[(2-benzylphenyl)carbonyl]amino}ethyl](trihydroxy)borate(1-)
2
4
SULFATE IONSULFATE ION
3
2
COBALT (II) IONCOBALT (II) ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303