2WB4: activated diguanylate cyclase PleD in complex with c-di-GMP

PDB ID: 2WB4Download
MMDB ID: 81477
PDB Deposition Date: 2009/2/20
Updated in MMDB: 2023/12
Experimental Method:
x-ray diffraction
Resolution: 2.8  Å
Source Organism:
Similar Structures:
Biological Unit for 2WB4: dimeric; determined by author and by software (PISA)
Molecular Components in 2WB4
Label Count Molecule
Proteins (2 molecules)
2
Diguanylate Cyclase
(Gene symbol: pleD)
Molecule annotation
Chemicals and Non-standard biopolymers (13 molecules)
1
2
BERYLLIUM TRIFLUORIDE IONBERYLLIUM TRIFLUORIDE ION
2
3
MAGNESIUM IONMAGNESIUM ION
3
5
9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one)9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one)
4
3
SULFATE IONSULFATE ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303