2VDN: Re-refinement of Integrin AlphaIIbBeta3 Headpiece Bound to Antagonist Eptifibatide

PDB ID: 2VDNDownload
MMDB ID: 146079
PDB Deposition Date: 2007/10/10
Updated in MMDB: 2023/12
Experimental Method:
x-ray diffraction
Resolution: 2.9  Å
Source Organism:
synthetic construct▼
Similar Structures:
Biological Unit for 2VDN: pentameric; determined by author and by software (PQS)
Molecular Components in 2VDN
Label Count Molecule
Proteins (5 molecules)
1
Integrin Alpha-iib
Molecule annotation
1
Integrin Beta-3
Molecule annotation
1
Eptifibatide
Molecule annotation
1
Monoclonal Antibody 10e5 Heavy Chain
Molecule annotation
1
Monoclonal Antibody 10e5 Light Chain
Molecule annotation
Chemicals and Non-standard biopolymers (24 molecules)
1
7
2-acetamido-2-deoxy-beta-D-glucopyranose2-acetamido-2-deoxy-beta-D-glucopyranose
2
8
alpha-D-mannopyranosealpha-D-mannopyranose
3
2
GLYCEROLGLYCEROL
4
6
CALCIUM IONCALCIUM ION
5
1
MAGNESIUM IONMAGNESIUM ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303