2V4R: Non-productive complex of the Y-family DNA polymerase Dpo4 with dGTP skipping the M1dG adduct to pair with the next template cytosine

PDB ID: 2V4RDownload
MMDB ID: 73263
PDB Deposition Date: 2008/9/26
Updated in MMDB: 2019/10
Experimental Method:
x-ray diffraction
Resolution: 2.5  Å
Source Organism:
Saccharolobus solfataricus P2▼
Similar Structures:
Biological Unit for 2V4R: trimeric; determined by author and by software (PISA)
Molecular Components in 2V4R
Label Count Molecule
Protein (1 molecule)
1
DNA Polymerase IV
Molecule annotation
Nucleotides(2 molecules)
1
5'-d(*gp*gp*gp*gp*gp*ap*ap*gp*gp*ap*tp*tp*c)-3'
Molecule annotation
1
5'-d(*tp*cp*ap*cp*m1gp*gp*ap*ap*tp*cp*cp *tp*tp*cp*cp*cp*cp*c)-3'
Molecule annotation
Chemicals and Non-standard biopolymers (4 molecules)
1
1
2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE
2
3
CALCIUM IONCALCIUM ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303