2ORX: Structural Basis For Ligand Binding And Heparin Mediated Activation Of Neuropilin

Neuropilin (Nrp) is a cell surface receptor with essential roles in angiogenesis and axon guidance. Interactions between Nrp and the positively charged C termini of its ligands, VEGF and semaphorin, are mediated by Nrp domains b1 and b2, which share homology to coagulation factor domains. We report here the crystal structure of the tandem b1 and b2 domains of Nrp-1 (N1b1b2) and show that they form a single structural unit. Cocrystallization of N1b1b2 with Tuftsin, a peptide mimic of the VEGF C terminus, reveals the site of interaction with the basic tail of VEGF on the b1 domain. We also show that heparin promotes N1b1b2 dimerization and map the heparin binding site on N1b1b2. These results provide a detailed picture of interactions at the core of the Nrp signaling complex and establish a molecular basis for the synergistic effects of heparin on Nrp-mediated signaling.
PDB ID: 2ORXDownload
MMDB ID: 45252
PDB Deposition Date: 2007/2/5
Updated in MMDB: 2012/11
Experimental Method:
x-ray diffraction
Resolution: 2.4  Å
Source Organism:
Similar Structures:
Biological Unit for 2ORX: monomeric; determined by author and by software (PISA)
Molecular Components in 2ORX
Label Count Molecule
Protein (1 molecule)
Neuropilin-1(Gene symbol: Nrp1)
Molecule annotation
* Click molecule labels to explore molecular sequence information.

Citing MMDB