2NPY: Crystal Structure of a junctioned hairpin ribozyme incorporating 9atom linker and 2'-deoxy 2'-amino U at A-1

PDB ID: 2NPYDownload
MMDB ID: 92815
PDB Deposition Date: 2006/10/30
Updated in MMDB: 2023/09
Experimental Method:
x-ray diffraction
Resolution: 2.65  Å
Source Organism:
Biological Unit for 2NPY: tetrameric; determined by author
Molecular Components in 2NPY
Label Count Molecule
Nucleotides(4 molecules)
1
5'-r(*up*cp*cp*cp*(u2n)p*gp*up*cp*cp*ap*cp*cp*g)-3'
Molecule annotation
1
5'-r(*cp*gp*gp*up*gp*ap*gp*ap*ap*gp*gp*g)-3'
Molecule annotation
1
5'-r(*gp*gp*cp*ap*gp*ap*gp*ap*ap*ap*cp*ap*cp*ap*cp*gp*a)-3'
Molecule annotation
1
5'-r(*up*cp*gp*up*gp*gp*up*ap*cp*ap*up*up*ap*cp*cp*up*gp*cp*c)-3'
Molecule annotation
Chemicals and Non-standard biopolymers (2 molecules)
1
1
COBALT HEXAMMINE(III)COBALT HEXAMMINE(III)
2
1
2-[2-(2-HYDROXYETHOXY)ETHOXY]ETHYL DIHYDROGEN PHOSPHATE2-[2-(2-HYDROXYETHOXY)ETHOXY]ETHYL DIHYDROGEN PHOSPHATE
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303