2M5I: NMR structures of human apoptotic protein tBid in LPPG micelle

Citation:
Abstract
The Bcl-2 family proteins regulate mitochondria-mediated apoptosis through intricate molecular mechanisms. One of the pro-apoptotic proteins, tBid, can induce apoptosis by promoting Bax activation, Bax homo-oligomerization, and mitochondrial outer membrane permeabilization. Association of tBid on the mitochondrial outer membrane is key to its biological function. Therefore knowing the conformation of tBid on the membrane will be the first step toward understanding its crucial role in triggering apoptosis. Here, we present NMR characterization of the structure and dynamics of human tBid in 1-palmitoyl-2-hydroxy-sn-glycero-3-[phospho-RAC-(1-glycerol)] micelles. Our data showed that tBid is monomeric with six well defined alpha-helices in the micelles. Compared with the full-length Bid structure, a longer flexible loop between tBid helix alpha4 and alpha5 was observed. Helices in tBid do not pack into a compact-fold but form an extended structure with a C-shape configuration in the micelles. All six tBid helices were shown to interact with LPPG micelles, with helix alpha6 and alpha7 being more embedded. Of note, the BH3-containing helix alpha3, which was previously believed to be exposed above the membrane surface, is also membrane associated, suggesting an "on the membrane" binding mode for tBid interaction with Bax. Our data provided structural details on the membrane-associated state of tBid and the functional implications of its membrane-associated BH3 domain.
PDB ID: 2M5IDownload
MMDB ID: 114987
PDB Deposition Date: 2013/2/25
Updated in MMDB: 2013/11
Experimental Method:
solution nmr
Source Organism:
Similar Structures:
Biological Unit for 2M5I: monomeric; determined by author
Molecular Components in 2M5I
Label Count Molecule
Protein (1 molecule)
1
Bh3-interacting Domain Death Agonist(Gene symbol: BID)
Molecule annotation
* Click molecule labels to explore molecular sequence information.

Citing MMDB
.