2K6R: Protein folding on a highly rugged landscape: Experimental observation of glassy dynamics and structural frustration

Citation:
Abstract
How do proteins accomplish folding during early evolution? Theoretically the mechanism involves the selective stabilization of the native structure against all other competing compact conformations in a process that involves cumulative changes in the amino acid sequence along geological timescales. Thus, an evolved protein folds into a single structure at physiological temperature, but the conformational competition remains latent. For natural proteins such competition should emerge only near cryogenic temperatures, which places it beyond experimental testing. Here, we introduce a designed monomeric miniprotein (FSD-1ss) that within biological temperatures (330-280 K) switches between simple fast folding and highly complex conformational dynamics in a structurally degenerate compact ensemble. Our findings demonstrate the physical basis for protein folding evolution in a designed protein, which exhibits poorly evolved or primordial folding. Furthermore, these results open the door to the experimental exploration of primitive folding and the switching between alternative protein structures that takes place in evolutionary branching points and prion diseases, as well as the benchmarking of de novo design methods.
PDB ID: 2K6RDownload
MMDB ID: 140002
PDB Deposition Date: 2008/7/18
Updated in MMDB: 2016/06
Experimental Method:
solution nmr
Source Organism:
Similar Structures:
Biological Unit for 2K6R: monomeric; determined by author
Molecular Components in 2K6R
Label Count Molecule
Protein (1 molecule)
1
Full Sequence Design 1 Synthetic Superstable
Molecule annotation
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