2IVK: Crystal structure of the periplasmic endonuclease Vvn complexed with a 16-bp DNA

PDB ID: 2IVKDownload
MMDB ID: 149425
PDB Deposition Date: 2006/6/14
Updated in MMDB: 2023/12
Experimental Method:
x-ray diffraction
Resolution: 2.9  Å
Source Organism:
synthetic construct▼
Similar Structures:
Molecular Components in 2IVK
Label Count Molecule
Proteins (4 molecules)
4
Endonuclease I
Molecule annotation
Nucleotides(6 molecules)
2
5'-d(*gp*ap*ap*tp*tp*cp*gp*ap*tp*cp *gp*ap*ap*tp*t)-3'
Molecule annotation
2
5'-d(*ap*ap*tp*tp*cp*gp*ap*tp*cp*gp *ap*ap*tp*tp*c)-3'
Molecule annotation
2
5'-d(*gp*ap*ap*tp*tp*cp*gp*ap*tp*cp *gp*ap*ap*tp*tp*c)-3'
Molecule annotation
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303