2GD4: Crystal Structure of the Antithrombin-S195A Factor Xa-Pentasaccharide Complex

PDB ID: 2GD4Download
MMDB ID: 39360
PDB Deposition Date: 2006/3/15
Updated in MMDB: 2012/12
Experimental Method:
x-ray diffraction
Resolution: 3.3  Å
Source Organism:
Similar Structures:
Biological Unit for 2GD4: trimeric; determined by author and by software (PISA)
Molecular Components in 2GD4
Label Count Molecule
Proteins (3 molecules)
1
Coagulation Factor X, Stuart Factor, Stuart-prower Factor, Contains: Factor X Light Chain; Factor X Heavy Chain; Activated Factor XA Heavy Chain
(Gene symbol: F10)
Molecule annotation
1
Coagulation Factor, Stuart Factor, Stuart-prower Factor, Contains: Factor X Light Chain; Factor X Heavy Chain; Activated Factor XA Heavy Chain
(Gene symbol: F10)
Molecule annotation
1
Antithrombin-iii
(Gene symbol: SERPINC1)
Molecule annotation
Chemicals and Non-standard biopolymers (12 molecules)
1
4
2-acetamido-2-deoxy-beta-D-glucopyranose2-acetamido-2-deoxy-beta-D-glucopyranose
2
1
beta-D-mannopyranosebeta-D-mannopyranose
3
1
alpha-D-mannopyranosealpha-D-mannopyranose
4
1
methyl 2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranosidemethyl 2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranoside
5
1
2-O-sulfo-alpha-L-idopyranuronic acid2-O-sulfo-alpha-L-idopyranuronic acid
6
1
2-deoxy-3,6-di-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose2-deoxy-3,6-di-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose
7
1
beta-D-glucopyranuronic acidbeta-D-glucopyranuronic acid
8
1
2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose
9
1
CALCIUM IONCALCIUM ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303