2FMS: DNA Polymerase beta with a gapped DNA substrate and dUMPNPP with magnesium in the catalytic site

PDB ID: 2FMSDownload
MMDB ID: 94155
PDB Deposition Date: 2006/1/9
Updated in MMDB: 2011/10
Experimental Method:
x-ray diffraction
Resolution: 2  Å
Source Organism:
synthetic construct▼
Similar Structures:
Biological Unit for 2FMS: tetrameric; determined by author
Molecular Components in 2FMS
Label Count Molecule
Protein (1 molecule)
1
DNA Polymerase Beta
Molecule annotation
Nucleotides(3 molecules)
1
5'-d(*cp*cp*gp*ap*cp*ap*gp*cp*gp*cp*ap*tp*cp*ap*gp*c)-3'
Molecule annotation
1
5'-d(*gp*cp*tp*gp*ap*tp*gp*cp*gp*c)-3'
Molecule annotation
1
5'-d(p*gp*tp*cp*gp*g)-3'
Molecule annotation
Chemicals and Non-standard biopolymers (9 molecules)
1
2
MAGNESIUM IONMAGNESIUM ION
2
2
SODIUM IONSODIUM ION
3
4
CHLORIDE IONCHLORIDE ION
4
1
2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303