2E2J: RNA polymerase II elongation complex in 5 mM Mg+2 with GMPCPP

PDB ID: 2E2JDownload
MMDB ID: 182235
PDB Deposition Date: 2006/11/14
Updated in MMDB: 2019/12
Experimental Method:
x-ray diffraction
Resolution: 3.5  Å
Source Organism:
synthetic construct▼
Similar Structures:
Biological Unit for 2E2J: tridecameric; determined by author
Molecular Components in 2E2J
Label Count Molecule
Proteins (10 molecules)
1
DNA-directed RNA Polymerase II Largest Subunit
Molecule annotation
1
DNA-directed RNA Polymerase II 140 KDA Polypeptide
Molecule annotation
1
DNA-directed RNA Polymerase II 45 KDA Polypeptide
Molecule annotation
1
DNA-directed RNA Polymerases I, II, and III 27 KDA Polypeptide
Molecule annotation
1
DNA-directed RNA Polymerases I, II, and III 23 KDA Polypeptide
Molecule annotation
1
DNA-directed RNA Polymerases I, II, and III 14.5 KDA Polypeptide
Molecule annotation
1
DNA-directed RNA Polymerase II Subunit 9
Molecule annotation
1
DNA-directed RNA Polymerases I/ii/iii Subunit 10
Molecule annotation
1
DNA-directed RNA Polymerase II 13.6 KDA Polypeptide
Molecule annotation
1
DNA-directed RNA Polymerases I, II, and III 7.7 KDA Polypeptide
Molecule annotation
Nucleotides(3 molecules)
1
5'-r(p*ap*up*cp*gp*ap*gp*ap*gp*g)-3'
Molecule annotation
1
27-mer DNA Template Strand
Molecule annotation
1
5'-d(p*cp*tp*gp*cp*tp*tp*ap*tp*cp*gp*gp*tp*a)-3'
Molecule annotation
Chemicals and Non-standard biopolymers (11 molecules)
1
1
PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTERPHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER
2
8
ZINC IONZINC ION
3
2
MAGNESIUM IONMAGNESIUM ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303