2DU4: Crystal Structure Of Archaeoglobus Fulgidus O-Phosphoseryl- Trna Synthetase Complexed With Trnacys

Citation:
Abstract
Cysteine is ligated to tRNA(Cys) by cysteinyl-tRNA synthetase in most organisms. However, in methanogenic archaea lacking cysteinyl-tRNA synthetase, O-phosphoserine is ligated to tRNA(Cys) by O-phosphoseryl-tRNA synthetase (SepRS), and the phosphoseryl-tRNA(Cys) is converted to cysteinyl-tRNA(Cys). In this study, we determined the crystal structure of the SepRS tetramer in complex with tRNA(Cys) and O-phosphoserine at 2.6-A resolution. The catalytic domain of SepRS recognizes the negatively charged side chain of O-phosphoserine at a noncanonical site, using the dipole moment of a conserved alpha-helix. The unique C-terminal domain specifically recognizes the anticodon GCA of tRNA(Cys). On the basis of the structure, we engineered SepRS to recognize tRNA(Cys) mutants with the anticodons UCA and CUA and clarified the anticodon recognition mechanism by crystallography. The mutant SepRS-tRNA pairs may be useful for translational incorporation of O-phosphoserine into proteins in response to the stop codons UGA and UAG.
PDB ID: 2DU4Download
MMDB ID: 68907
PDB Deposition Date: 2006/7/20
Updated in MMDB: 2011/10
Experimental Method:
x-ray diffraction
Resolution: 2.8  Å
Source Organism:
Archaeoglobus fulgidus
Similar Structures:
Biological Unit for 2DU4: hexameric; determined by author
Molecular Components in 2DU4
Label Count Molecule
Proteins (4 molecules)
4
O-phosphoseryl-trna Synthetase(Gene symbol: AF_RS00540)
Molecule annotation
Nucleotide(1 molecule)
2
tRNA
Molecule annotation
* Click molecule labels to explore molecular sequence information.

Citing MMDB
.