2DDG: Crystal structure of uracil-DNA glycosylase in complex with AP:G containing DNA

PDB ID: 2DDGDownload
MMDB ID: 244187
PDB Deposition Date: 2006/1/28
Updated in MMDB: 2024/03
Experimental Method:
x-ray diffraction
Resolution: 2.1  Å
Source Organism:
Thermus thermophilus HB8▼
Similar Structures:
Biological Unit for 2DDG: trimeric; determined by author
Molecular Components in 2DDG
Label Count Molecule
Protein (1 molecule)
1
Uracil-dna Glycosylase
Molecule annotation
Nucleotides(2 molecules)
1
5'-d(*ap*tp*gp*tp*tp*gp*cp*(d1p)p*tp*tp*ap*gp*tp*cp*c)-3'
Molecule annotation
1
5'-d(*gp*gp*ap*cp*tp*ap*ap*gp*gp*cp*ap*ap*cp*a)-3'
Molecule annotation
Chemicals and Non-standard biopolymers (10 molecules)
1
2
ACETATE IONACETATE ION
2
2
DIHYDROGENPHOSPHATE IONDIHYDROGENPHOSPHATE ION
3
1
IRON/SULFUR CLUSTERIRON/SULFUR CLUSTER
4
1
GLYCEROLGLYCEROL
5
4
ETHANOLETHANOL
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303