2BVM: Crystal structure of the catalytic domain of toxin B from Clostridium difficile in complex with UDP, Glc and manganese ion

PDB ID: 2BVMDownload
MMDB ID: 34929
PDB Deposition Date: 2005/6/30
Updated in MMDB: 2023/12
Experimental Method:
x-ray diffraction
Resolution: 2.55  Å
Source Organism:
Similar Structures:
Biological Unit for 2BVM: monomeric; determined by author and by software (PQS)
Molecular Components in 2BVM
Label Count Molecule
Protein (1 molecule)
1
Toxin B
Molecule annotation
Chemicals and Non-standard biopolymers (4 molecules)
1
1
MANGANESE (II) IONMANGANESE (II) ION
2
1
URIDINE-5'-DIPHOSPHATEURIDINE-5'-DIPHOSPHATE
3
1
alpha-D-glucopyranosealpha-D-glucopyranose
4
1
SULFATE IONSULFATE ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303