2ARX: Pterocarpus Angolensis Seed Lectin In Complex With The Decasaccharide Na2f

Citation:
Abstract
The crystal structure of Pterocarpus angolensis lectin is determined in its ligand-free state, in complex with the fucosylated biantennary complex type decasaccharide NA2F, and in complex with a series of smaller oligosaccharide constituents of NA2F. These results together with thermodynamic binding data indicate that the complete oligosaccharide binding site of the lectin consists of five subsites allowing the specific recognition of the pentasaccharide GlcNAc beta(1-2)Man alpha(1-3)[GlcNAc beta(1-2)Man alpha(1-6)]Man. The mannose on the 1-6 arm occupies the monosaccharide binding site while the GlcNAc residue on this arm occupies a subsite that is almost identical to that of concanavalin A (con A). The core mannose and the GlcNAc beta(1-2)Man moiety on the 1-3 arm on the other hand occupy a series of subsites distinct from those of con A.
PDB ID: 2ARXDownload
MMDB ID: 40256
PDB Deposition Date: 2005/8/22
Updated in MMDB: 2007/10
Experimental Method:
x-ray diffraction
Resolution: 2  Å
Source Organism:
Similar Structures:
Biological Unit for 2ARX: dimeric; determined by author
Molecular Components in 2ARX
Label Count Molecule
Proteins (2 molecules)
2
Lectin
Molecule annotation
Chemicals (14 molecules)
1
4
2
2
3
2
4
3
5
1
6
1
7
1
* Click molecule labels to explore molecular sequence information.

Citing MMDB
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