1XSJ: Structure Of A Family 31 Alpha Glycosidase

Citation:
Abstract
We have determined the first structure of a family 31 alpha-glycosidase, that of YicI from Escherichia coli, both free and trapped as a 5-fluoroxylopyranosyl-enzyme intermediate via reaction with 5-fluoro-alpha-D-xylopyranosyl fluoride. Our 2.2-A resolution structure shows an intimately associated hexamer with structural elements from several monomers converging at each of the six active sites. Our kinetic and mass spectrometry analyses verified several of the features observed in our structural data, including a covalent linkage from the carboxylate side chain of the identified nucleophile Asp(416) to C-1 of the sugar ring. Structure-based sequence comparison of YicI with the mammalian alpha-glucosidases lysosomal alpha-glucosidase and sucrase-isomaltase predicts a high level of structural similarity and provides a foundation for understanding the various mutations of these enzymes that elicit human disease.
PDB ID: 1XSJDownload
MMDB ID: 30228
PDB Deposition Date: 2004/10/19
Updated in MMDB: 2004/12
Experimental Method:
x-ray diffraction
Resolution: 2.1  Å
Source Organism:
Similar Structures:
Biological Unit for 1XSJ: hexameric; determined by author and by software (PISA)
Molecular Components in 1XSJ
Label Count Molecule
Proteins (6 molecules)
6
Putative Family 31 Glucosidase Yici(Gene symbol: yicI)
Molecule annotation
Chemicals (12 molecules)
1
12
* Click molecule labels to explore molecular sequence information.

Citing MMDB
.