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1RB8:
The phiX174 DNA binding protein J in two different capsid environments
PDB ID:
1RB8
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MMDB ID:
229371
PDB Deposition Date:
2003/11/3
Updated in MMDB:
2024/04
Experimental Method:
x-ray diffraction
Resolution:
3.5 Å
Source Organism:
synthetic construct
▼
Taxonomy
Molecule
synthetic construct
X
Escherichia phage alpha3
F, G
Sinsheimervirus phiX174
J
Similar Structures:
VAST+
Download sequence data
Biological Unit for 1RB8: 240-meric
Molecular Components in 1RB8
Label
Count
Molecule
Proteins (180 molecules)
F
F_1
F_2
F_3
F_4
F_5
F_6
F_7
F_8
F_9
F_10
F_11
F_12
F_13
F_14
F_15
F_16
F_17
F_18
F_19
F_20
F_21
F_22
F_23
F_24
F_25
F_26
F_27
F_28
F_29
…
60
Capsid Protein
G
G_1
G_2
G_3
G_4
G_5
G_6
G_7
G_8
G_9
G_10
G_11
G_12
G_13
G_14
G_15
G_16
G_17
G_18
G_19
G_20
G_21
G_22
G_23
G_24
G_25
G_26
G_27
G_28
G_29
…
60
Major Spike Protein
J
J_1
J_2
J_3
J_4
J_5
J_6
J_7
J_8
J_9
J_10
J_11
J_12
J_13
J_14
J_15
J_16
J_17
J_18
J_19
J_20
J_21
J_22
J_23
J_24
J_25
J_26
J_27
J_28
J_29
…
60
Small Core Protein
Nucleotides(60 molecules)
X
X_1
X_2
X_3
X_4
X_5
X_6
X_7
X_8
X_9
X_10
X_11
X_12
X_13
X_14
X_15
X_16
X_17
X_18
X_19
X_20
X_21
X_22
X_23
X_24
X_25
X_26
X_27
X_28
X_29
…
60
DNA (5'-d(p*cp*ap*ap*a)-3')
Chemicals and Non-standard biopolymers (300 molecules)
1
300
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH.
"
MMDB and VAST+: tracking structural similarities between macromolecular complexes.
Nucleic Acids Res. 2014 Jan; 42(Database issue)
:D297-303