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Biotechnology Information

1ND3: The structure of HRV16, when complexed with pleconaril, an antiviral compound

PDB ID:	1ND3 Download
MMDB ID:	25609
PDB Deposition Date:	2002/12/6
Updated in MMDB:	2012/11
Experimental Method:	x-ray diffraction
Resolution:	2.8 Å
Source Organism:	rhinovirus A16
Similar Structures:

Biological Unit for 1ND3: 240-meric

Molecular Components in 1ND3
Label	Count	Molecule
Proteins (240 molecules)
A A_1 A_2 A_3 A_4 A_5 A_6 A_7 A_8 A_9 A_10 A_11 A_12 A_13 A_14 A_15 A_16 A_17 A_18 A_19 A_20 A_21 A_22 A_23 A_24 A_25 A_26 A_27 A_28 A_29 …	60	Coat Protein VP1
B B_1 B_2 B_3 B_4 B_5 B_6 B_7 B_8 B_9 B_10 B_11 B_12 B_13 B_14 B_15 B_16 B_17 B_18 B_19 B_20 B_21 B_22 B_23 B_24 B_25 B_26 B_27 B_28 B_29 …	60	Coat Protein VP2
C C_1 C_2 C_3 C_4 C_5 C_6 C_7 C_8 C_9 C_10 C_11 C_12 C_13 C_14 C_15 C_16 C_17 C_18 C_19 C_20 C_21 C_22 C_23 C_24 C_25 C_26 C_27 C_28 C_29 …	60	Coat Protein VP3
D D_1 D_2 D_3 D_4 D_5 D_6 D_7 D_8 D_9 D_10 D_11 D_12 D_13 D_14 D_15 D_16 D_17 D_18 D_19 D_20 D_21 D_22 D_23 D_24 D_25 D_26 D_27 D_28 D_29 …	60	Coat Protein VP4
Chemicals and Non-standard biopolymers (118 molecules)
1	58	ZINC ION
2	60	3-{3,5-DIMETHYL-4-[3-(3-METHYL-ISOXAZOL-5-YL)-PROPOXY]-PHENYL}-5-TRIFLUOROMETHYL-[1,2,4]OXADIAZOLE

* Click molecule labels to explore molecular sequence information.

Citing MMDB

Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303