1JXL: Crystal Structure of a Y-Family DNA Polymerase in a Ternary Complex with DNA Substrates and an Incoming Nucleotide

PDB ID: 1JXLDownload
MMDB ID: 102310
PDB Deposition Date: 2001/9/7
Updated in MMDB: 2019/11
Experimental Method:
x-ray diffraction
Resolution: 2.1  Å
Source Organism:
synthetic construct▼
Similar Structures:
Biological Unit for 1JXL: trimeric; determined by author
Molecular Components in 1JXL
Label Count Molecule
Protein (1 molecule)
1
DNA Polymerase IV (Family Y)
Molecule annotation
Nucleotides(2 molecules)
1
5'-d(*gp*gp*gp*gp*gp*ap*ap*gp*gp*ap*tp*t)-3'
Molecule annotation
1
5'-d(*t*tp*cp*gp*ap*ap*(bru)p*cp*cp*tp*(bru)p*cp*cp*cp*cp*c)-3'
Molecule annotation
Chemicals and Non-standard biopolymers (6 molecules)
1
1
1,2-ETHANEDIOL1,2-ETHANEDIOL
2
1
CALCIUM IONCALCIUM ION
3
3
MAGNESIUM IONMAGNESIUM ION
4
1
2'-3'-DIDEOXYGUANOSINE-5'-TRIPHOSPHATE2'-3'-DIDEOXYGUANOSINE-5'-TRIPHOSPHATE
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303