1IM4: Crystal Structure Of A Dinb Homolog (Dbh) Lesion Bypass Dna Polymerase Catalytic Fragment From Sulfolobus Solfataricus

Citation:
Abstract
The UmuC/DinB family of bypass polymerases is responsible for translesion DNA synthesis and includes the human polymerases eta, iota, and kappa. We determined the 2.3 A resolution crystal structure of a catalytic fragment of the DinB homolog (Dbh) polymerase from Sulfolobus solfataricus and show that it is nonprocessive and can bypass an abasic site. The structure of the catalytic domain is nearly identical to those of most other polymerase families. Homology modeling suggests that there is minimal contact between protein and DNA, that the nascent base pair binding pocket is quite accessible, and that the enzyme is already in a closed conformation characteristic of ternary polymerase complexes. These observations afford insights into the sources of low fidelity and low processivity of the UmuC/DinB polymerases.
PDB ID: 1IM4Download
MMDB ID: 17404
PDB Deposition Date: 2001/5/9
Updated in MMDB: 2012/11
Experimental Method:
x-ray diffraction
Resolution: 2.3  Å
Source Organism:
Similar Structures:
Biological Unit for 1IM4: monomeric; determined by author
Molecular Components in 1IM4
Label Count Molecule
Protein (1 molecule)
1
DBH
Molecule annotation
Chemicals (3 molecules)
1
3
* Click molecule labels to explore molecular sequence information.

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