6KF9: Cryo-EM structure of Thermococcus kodakarensis RNA polymerase

PDB ID: 6KF9Download
MMDB ID: 189400
PDB Deposition Date: 2019/7/7
Updated in MMDB: 2020/07
Experimental Method:
electron microscopy
Resolution: 3.79  Å
Source Organism:
Similar Structures:
Biological Unit for 6KF9: 14-meric; determined by author
Molecular Components in 6KF9
Label Count Molecule
Proteins (12 molecules)
1
DNA-directed RNA Polymerase Subunit
Molecule annotation
1
DNA-directed RNA Polymerase Subunit Beta
Molecule annotation
1
DNA-directed RNA Polymerase Subunit A''
(Gene symbol: rpoA2)
Molecule annotation
1
DNA-directed RNA Polymerase Subunit D
Molecule annotation
1
DNA-directed RNA Polymerase, Subunit E
Molecule annotation
1
DNA-directed RNA Polymerase, Subunit F
Molecule annotation
1
DNA-directed RNA Polymerase Subunit H
(Gene symbol: TK_RS05325)
Molecule annotation
1
DNA-directed RNA Polymerase Subunit K
(Gene symbol: TK_RS07470)
Molecule annotation
1
DNA-directed RNA Polymerase Subunit L
(Gene symbol: TK_RS05745)
Molecule annotation
1
DNA-directed RNA Polymerase Subunit N
(Gene symbol: TK_RS07480)
Molecule annotation
1
DNA-directed RNA Polymerase Subunit P
(Gene symbol: TK_RS03045)
Molecule annotation
1
Transcription Factor E
(Gene symbol: tfe)
Molecule annotation
Nucleotides(2 molecules)
1
DNA (5'-d(p*tp*cp*gp*gp*tp*ap*ap*tp*cp*ap*cp*gp*cp*tp*cp*c)-3')
Molecule annotation
1
DNA (27-mer)
Molecule annotation
Chemicals and Non-standard biopolymers (7 molecules)
1
1
MAGNESIUM IONMAGNESIUM ION
2
6
ZINC IONZINC ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303